Aggregation queries showing slowness when under load

There is the following query tuning guide that may help:

http://www.aerospike.com/docs/operations/manage/queries/

Its possible that with load your server is reaching a certain network bottleneck.

Is your network using 1G or 10G ? Whats the network usage during these high load period.

You may be able to use a tool like iperf to test your network during load.

https://discuss.aerospike.com/t/iperf-network-performance-measuring/729

How many CPU Cores does these nodes have?